STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0093KEGG: tdn:Suden_1266 hypothetical protein. (99 aa)    
Predicted Functional Partners:
Sdel_0092
PFAM: protein of unknown function DUF520; KEGG: cco:CCC13826_1649 putative nucleotide-binding protein; Belongs to the UPF0234 family.
       0.773
Sdel_0088
KEGG: cco:CCC13826_1645 putative phage integrase.
       0.762
Sdel_0089
KEGG: abu:Abu_1069 hypothetical protein.
       0.762
Sdel_0090
PFAM: glutathionylspermidine synthase; KEGG: abu:Abu_1068 glutathionylspermidine synthase family protein.
       0.762
Sdel_0091
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ccv:CCV52592_1540 glycerate dehydrogenase.
       0.762
Sdel_0094
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
       0.762
rpsU
TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: cjd:JJD26997_1587 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.492
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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