STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0130PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cco:CCC13826_1791 ATP-dependent DNA helicase PcrA. (253 aa)    
Predicted Functional Partners:
Sdel_0129
PFAM: ABC-3 protein; transport system permease protein; KEGG: ccv:CCV52592_0098 cation ABC transporter, permease protein.
 0.999
Sdel_0131
PFAM: periplasmic solute binding protein; KEGG: abu:Abu_1739 putative cation ABC transporter, periplasmic-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.999
Sdel_1724
PFAM: protein of unknown function DUF214; KEGG: mei:Msip34_1219 protein of unknown function DUF214.
 
    0.872
Sdel_0023
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0987 putative oligopeptide transporter.
 
   
0.733
Sdel_0132
PFAM: ferric-uptake regulator; KEGG: abu:Abu_1740 FUR family transcriptional regulator; Belongs to the Fur family.
  
  
 0.723
Sdel_1663
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_1522 ABC transporter, ATP-binding protein.
 
   
0.645
nfo
Apurinic endonuclease Apn1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
  
    0.593
Sdel_0133
KEGG: cff:CFF8240_1671 hypothetical protein.
       0.523
Sdel_0135
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: wsu:WS0236 hypothetical protein.
       0.480
Sdel_0136
PFAM: AMP-dependent synthetase and ligase; KEGG: cff:CFF8240_1668 acyl-CoA synthetase.
       0.480
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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