STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0299PFAM: conserved hypothetical protein; KEGG: tdn:Suden_0709 hypothetical protein; Belongs to the LOG family. (244 aa)    
Predicted Functional Partners:
Sdel_0298
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: cco:CCC13826_1019 flagellar motor switch protein FliY.
       0.803
Sdel_0295
KEGG: cco:CCC13826_1022 hypothetical protein.
       0.799
Sdel_0296
TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ccv:CCV52592_0370 flagellar biosynthesis sigma factor.
       0.799
Sdel_0297
TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: ccv:CCV52592_1439 flagellar motor switch protein FliM.
       0.799
Sdel_0300
KEGG: sec:SC0368 hypothetical protein.
       0.773
Sdel_0291
PFAM: peptidase M24; KEGG: wsu:WS1644 proline aminopeptidase; Belongs to the peptidase M24B family.
       0.740
Sdel_0292
TIGRFAM:2-amino-4-hydroxy-6- hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK; KEGG: sun:SUN_1040 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.
       0.740
Sdel_0293
KEGG: cco:CCC13826_0367 flagellar biosynthesis regulator FlhF; TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase.
       0.740
Sdel_0294
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ccv:CCV52592_0368 ParaA family ATPase.
       0.740
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.696
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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