STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0408PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_1535 ABC transporter, ATP-binding protein. (214 aa)    
Predicted Functional Partners:
Sdel_1724
PFAM: protein of unknown function DUF214; KEGG: mei:Msip34_1219 protein of unknown function DUF214.
 
 
 0.975
Sdel_0409
Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
       0.809
Sdel_1387
PFAM: protein of unknown function DUF214; KEGG: ccv:CCV52592_1860 PglC.
 
 0.709
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: ccv:CCV52592_1262 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
   
 
 0.698
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
     
 0.685
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 
 0.683
Sdel_1262
PFAM: AAA ATPase central domain protein; peptidase M41; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ccv:CCV52592_1068 putative cell division protease FtsH-like protein; Belongs to the AAA ATPase family.
 
   
 0.667
Sdel_2020
PFAM: protein of unknown function DUF214; KEGG: glo:Glov_1801 protein of unknown function DUF214.
  
 
 0.665
Sdel_0410
KEGG: tdn:Suden_1797 hypothetical protein.
       0.644
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   
 0.622
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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