STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0579KEGG: tdn:Suden_1270 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein. (315 aa)    
Predicted Functional Partners:
Sdel_0578
PFAM: Colicin V production protein; KEGG: cff:CFF8240_1144 CvpA family protein.
       0.785
Sdel_1820
KEGG: tdn:Suden_0380 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein.
 
   0.776
fur-3
PFAM: ferric-uptake regulator; KEGG: cco:CCC13826_0224 putative iron-regulated membrane protein; Belongs to the Fur family.
       0.774
Sdel_0268
Diguanylate cyclase; KEGG: pin:Ping_1203 sensor histidine kinase PAS domain-containing protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; FIST C domain; domain of unknown function DUF1745; GGDEF domain containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein.
 
 0.743
Sdel_0467
PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: abu:Abu_0830 EAL domain-containing protein.
 
  
 0.738
Sdel_0006
PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: cff:CFF8240_0004 diguanylate cyclase/phosphodiesterase, putative.
 
    0.726
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: nis:NIS_1177 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.721
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
       0.720
Sdel_0574
PFAM: Domain of unknown function DUF1882; KEGG: cff:CFF8240_1140 hypothetical protein.
       0.718
Sdel_0748
PAS sensor protein; KEGG: nam:NAMH_0747 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; response regulator receiver; PAC repeat-containing protein; PAS domain containing protein.
 
 0.689
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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