STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0642PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0146 cell division protein FtsE. (223 aa)    
Predicted Functional Partners:
Sdel_1724
PFAM: protein of unknown function DUF214; KEGG: mei:Msip34_1219 protein of unknown function DUF214.
 
 
 0.975
Sdel_1663
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_1522 ABC transporter, ATP-binding protein.
 
    
0.924
Sdel_0023
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0987 putative oligopeptide transporter.
 
    
0.911
Sdel_0643
KEGG: ccv:CCV52592_0479 cell division protein FtsX.
     
 0.820
Sdel_0639
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
   
   0.812
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
      0.809
Sdel_0644
PFAM: Peptidase M23; KEGG: cff:CFF8240_1215 M24/M37 family peptidase.
       0.809
Sdel_0640
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: cff:CFF8240_1219 fibronectin type III domain- containing protein.
       0.799
Sdel_1313
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_0866 oligopeptide ABC transporter, ATP-binding protein.
 
    
0.793
Sdel_2020
PFAM: protein of unknown function DUF214; KEGG: glo:Glov_1801 protein of unknown function DUF214.
 
 
 0.695
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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