STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0661PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: wsu:WS2072 regulatory protein DniR. (415 aa)    
Predicted Functional Partners:
Sdel_2291
TIGRFAM: flagellar hook protein FlgE; fagellar hook- basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ccv:CCV52592_2040 flagellar hook protein FlgE.
  
 
 0.900
Sdel_0670
KEGG: ccv:CCV52592_0450 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
 
 0.893
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.881
Sdel_0664
TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: nis:NIS_0778 YrbI family phosphatase.
 
     0.839
engB
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
 
    0.837
Sdel_0668
PFAM: GCN5-related N-acetyltransferase; KEGG: tdn:Suden_1075 acetyltransferase; Belongs to the acetyltransferase family.
     
 0.825
hisB
PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: abu:Abu_0977 imidazoleglycerol-phosphate dehydratase.
     
 0.822
Sdel_0666
PFAM: OstA family protein; KEGG: cco:CCC13826_1992 cell envelope biogenesis protein YhbN.
     
 0.818
Sdel_0665
PFAM: protein of unknown function DUF1239; KEGG: ccv:CCV52592_0455 hypothetical protein.
       0.813
Sdel_0669
KEGG: ccv:CCV52592_0451 hypothetical protein.
       0.813
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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