STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_1017KEGG: tdn:Suden_1501 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Sdel_1018
PFAM: Radical SAM domain protein; cobalamin B12- binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tdn:Suden_0042 radical SAM family protein.
       0.689
trmA
tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA).
       0.645
Sdel_0080
PFAM: sulfatase; KEGG: abu:Abu_1799 putative sulfatase.
  
     0.512
Sdel_0263
PFAM: glycosyl transferase family 9; KEGG: tdn:Suden_0585 heptosyltransferase-like protein.
  
     0.479
Sdel_1014
TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; KEGG: cco:CCC13826_1403 threonine dehydratase.
       0.472
Sdel_1015
PFAM: CoA-binding domain protein; KEGG: tdn:Suden_1144 CoA-binding.
       0.472
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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