STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_1120TIGRFAM: outer membrane insertion C-terminal signal; KEGG: spl:Spea_0315 hypothetical protein. (206 aa)    
Predicted Functional Partners:
Sdel_1121
SMART: helix-turn-helix domain protein; KEGG: sun:SUN_2442 XRE family transcriptional regulator.
       0.548
Sdel_0362
KEGG: wsu:WS1850 putative cytochrome c-type haem- binding periplasmic protein.
  
 
 0.466
Sdel_0706
TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein; KEGG: wsu:WS0970 small subunit of cytochrome c nitrite reductase.
  
 
 0.466
Sdel_1446
PFAM: NapC/NirT cytochrome c domain protein; KEGG: cco:CCC13826_1831 NapC/NirT cytochrome c family, N-region.
  
 
 0.466
Sdel_2086
PFAM: NapC/NirT cytochrome c domain protein; KEGG: cco:CCC13826_1831 NapC/NirT cytochrome c family, N-region.
  
 
 0.466
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
    
 
 0.442
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
   0.415
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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