Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sdel_1237KEGG: cju:C8J_0906 hypothetical protein. (426 aa)    
Predicted Functional Partners:
Sdel_1236
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: nis:NIS_0687 uracil-DNA glycosylase.
       0.814
Sdel_2252
PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: tdn:Suden_0123 hypothetical protein.
  
    0.560
Sdel_1235
PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: abu:Abu_1725 DNA-binding response regulator.
       0.485
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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