STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_1310KEGG: cco:CCC13826_0148 hypothetical protein. (783 aa)    
Predicted Functional Partners:
Sdel_1307
KEGG: nis:NIS_0990 hypothetical protein.
       0.798
Sdel_1308
PFAM: protein of unknown function UPF0153; KEGG: nam:NAMH_1221 hypothetical protein.
       0.798
Sdel_1309
PFAM: methyltransferase small; Methyltransferase type 12; KEGG: cff:CFF8240_0637 methyltransferase small; Belongs to the methyltransferase superfamily.
       0.798
Sdel_1311
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sun:SUN_0563 thioredoxin reductase.
       0.797
Sdel_1305
PFAM: histidine triad (HIT) protein; KEGG: tdn:Suden_1203 histidine triad (HIT) protein.
       0.785
trpC
PFAM: Indole-3-glycerol phosphate synthase; KEGG: sun:SUN_1695 indole-3-glycerol-phosphate synthase; Belongs to the TrpC family.
     
 0.785
Sdel_1304
TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein; KEGG: cco:CCC13826_0142 tRNA 2-selenouridine synthase; Belongs to the SelU family.
       0.775
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.604
Sdel_1775
KEGG: hsm:HSM_0148 putative glycosyltransferase.
  
     0.563
proA
Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
     
 0.559
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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