STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_1346KEGG: cco:CCC13826_2061 thioesterase superfamily protein. (180 aa)    
Predicted Functional Partners:
Sdel_1344
KEGG: cff:CFF8240_1074 hypothetical protein.
       0.676
cmoB
Methyltransferase putative; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
       0.676
Sdel_0968
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
   0.594
plsX
Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
  
  
 0.533
Sdel_0220
PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: cff:CFF8240_0265 flagellar assembly protein H.
  
     0.516
Sdel_2159
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cff:CFF8240_1691 diguanylate cyclase.
  
     0.505
Sdel_1343
Xaa-His dipeptidase; PFAM: peptidase M20; KEGG: sun:SUN_1808 aminoacyl-histidine dipeptidase.
       0.490
Sdel_1692
KEGG: wsu:WS0783 putative periplasmic protein.
  
     0.489
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
    0.469
Sdel_1342
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pca:Pcar_1889 hypothetical protein.
       0.453
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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