STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_1417PFAM: NLP/P60 protein; KEGG: cco:CCC13826_1076 DNA gyrase subunit A. (666 aa)    
Predicted Functional Partners:
Sdel_1416
KEGG: sun:SUN_0982 hypothetical protein.
       0.628
Sdel_1414
Hypothetical protein; KEGG: cff:CFF8240_0574 putative periplasmic protein.
       0.565
Sdel_1415
KEGG: cco:CCC13826_1457 hydrogenase-4 component G.
       0.486
Sdel_0008
KEGG: abu:Abu_0634 hypothetical protein.
  
     0.484
Sdel_0127
PFAM: cytochrome c class I; KEGG: sun:SUN_0685 cytochrome c, class I.
  
   0.460
Sdel_1411
KEGG: nam:NAMH_1371 hypothetical protein.
  
  
 0.421
Sdel_0661
PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: wsu:WS2072 regulatory protein DniR.
  
  
 0.416
Sdel_1412
KEGG: nis:NIS_1564 hypothetical protein.
   
   0.410
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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