STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_1421PFAM: NnrS family protein; KEGG: abu:Abu_0560 hypothetical protein. (394 aa)    
Predicted Functional Partners:
Sdel_1420
KEGG: ftn:FTN_0284 prophage maintenance system killer protein (DOC).
 
     0.574
Sdel_0729
SMART: WD-40 repeat protein; KEGG: wsu:WS1171 putative periplasmic protein.
  
     0.549
Sdel_1691
KEGG: ccv:CCV52592_1920 HIT family protein.
  
     0.487
Sdel_2243
KEGG: tdn:Suden_0682 hypothetical protein.
  
     0.458
Sdel_1894
PFAM: DsrE family protein; KEGG: nam:NAMH_1288 hypothetical protein.
  
     0.452
Sdel_0676
TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: sun:SUN_1134 molybdopterin-guanine dinucleotide biosynthesis protein B.
  
     0.422
Sdel_0096
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: abu:Abu_1109 two-component sensor histidine kinase.
  
     0.413
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.