STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_1639PFAM: 17 kDa surface antigen; KEGG: nis:NIS_0377 hypothetical protein. (171 aa)    
Predicted Functional Partners:
Sdel_0918
KEGG: cla:Cla_0872 conserved hypothetical protein, putative transcriptional regulator.
  
     0.595
Sdel_1635
KEGG: nis:NIS_1471 hypothetical protein.
       0.551
Sdel_1636
TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: cco:CCC13826_0066 rhomboid family protein.
       0.551
Sdel_1637
KEGG: sun:SUN_0387 hypothetical protein.
       0.551
Sdel_1638
PFAM: Chorismate binding-like; KEGG: nis:NIS_0375 para-aminobenzoate synthase component I.
       0.551
Sdel_0531
PFAM: inositol monophosphatase; KEGG: nis:NIS_1199 inositol monophosphatase family protein.
  
   
 0.470
Sdel_0908
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: nam:NAMH_0210 exonuclease.
  
     0.438
Sdel_0951
KEGG: sun:SUN_0733 hypothetical protein.
  
     0.424
Sdel_0127
PFAM: cytochrome c class I; KEGG: sun:SUN_0685 cytochrome c, class I.
  
     0.420
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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