STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_1880PFAM: dUTPase; KEGG: cco:CCC13826_2153 dUTPase. (232 aa)    
Predicted Functional Partners:
Sdel_1881
PFAM: Patatin; KEGG: wsu:WS1459 hypothetical protein.
       0.701
Sdel_1882
PFAM: metallophosphoesterase; KEGG: wsu:WS1724 hypothetical protein.
       0.701
Sdel_1883
KEGG: abu:Abu_1538 PhoH family protein.
       0.701
thyX
Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
  
  
  0.556
Sdel_1366
KEGG: cco:CCC13826_2036 hypothetical protein.
  
     0.541
Sdel_1742
KEGG: abu:Abu_1445 hypothetical protein.
  
     0.538
Sdel_0188
KEGG: cha:CHAB381_1351 rod shape-determining protein MreC.
  
     0.523
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
     
  0.499
dcd
Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP.
     
  0.499
Sdel_0742
KEGG: cco:CCC13826_1919 cytochrome c subfamily protein.
  
     0.479
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.