Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_2000PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein. (455 aa)    
Predicted Functional Partners:
Sdel_2272
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: abu:Abu_0075 rhodanese-like sulfur transferase.
  
     0.610
Sdel_2252
PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: tdn:Suden_0123 hypothetical protein.
  
    0.560
Sdel_1998
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gme:Gmet_3281 transposase/IS protein.
       0.491
Sdel_1999
PFAM: Integrase catalytic region; KEGG: lpc:LPC_1389 putative transposase for insertion sequence element IS5376.
       0.491
Sdel_1501
PFAM: protein of unknown function DUF450; N-6 DNA methylase; KEGG: sun:SUN_2234 hypothetical protein.
  
    0.474
Sdel_0397
PFAM: Dynamin family protein; KEGG: abu:Abu_0298 ATP/GTP-binding protein.
 
     0.408
Sdel_0398
PFAM: Dynamin family protein; GTP-binding protein HSR1-related; KEGG: abu:Abu_0297 ATP/GTP-binding protein.
  
     0.406
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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