STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_2013KEGG: nis:NIS_0569 hypothetical protein. (414 aa)    
Predicted Functional Partners:
Sdel_2014
KEGG: cha:CHAB381_0073 hypothetical protein.
 
   
 0.929
Sdel_2010
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nam:NAMH_0527 short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.845
Sdel_2015
PFAM: plasmid maintenance system killer; KEGG: nis:NIS_1330 plasmid stabilization system protein.
       0.773
Sdel_2016
TIGRFAM: prevent-host-death family protein; KEGG: nis:NIS_1331 prevent-host-death family protein.
       0.773
Sdel_2011
KEGG: tdn:Suden_0122 hypothetical protein.
       0.664
Sdel_2012
TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: tdn:Suden_0121 DNA (cytosine-5-)- methyltransferase.
       0.664
Sdel_2017
KEGG: pat:Patl_1844 hypothetical protein.
       0.547
Sdel_1308
PFAM: protein of unknown function UPF0153; KEGG: nam:NAMH_1221 hypothetical protein.
  
     0.546
Sdel_2018
Hypothetical protein.
       0.529
Sdel_2009
TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; Fumarase C-like; KEGG: wsu:WS0662 aspartate ammonia-lyase.
       0.476
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.