STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selDSelenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. (343 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.985
Sdel_1304
TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein; KEGG: cco:CCC13826_0142 tRNA 2-selenouridine synthase; Belongs to the SelU family.
   
 0.970
Sdel_2154
Cysteine desulfurase, NifS family; KEGG: wsu:WS2206 cysteine desulfurase; TIGRFAM: cysteine desulfurase, NifS family; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase.
    
 0.916
Sdel_2054
TIGRFAM: selenium metabolism protein YedF; PFAM: SirA family protein; KEGG: nam:NAMH_1292 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
   
 0.910
Sdel_0172
KEGG: cju:C8J_0143 thioredoxin-disulfide reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
     
 0.909
Sdel_1311
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sun:SUN_0563 thioredoxin reductase.
     
 0.909
Sdel_2083
TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: nam:NAMH_1325 selenocysteine-specific translation elongation factor.
 
   
 0.849
Sdel_2128
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: abu:Abu_1508 transglutaminase family protein.
 
     0.479
fdhD
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
     
 0.421
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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