STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_2242Diguanylate cyclase; KEGG: sun:SUN_1481 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; Cache type 2 domain protein; SMART: EAL domain protein; GGDEF domain containing protein. (961 aa)    
Predicted Functional Partners:
Sdel_0268
Diguanylate cyclase; KEGG: pin:Ping_1203 sensor histidine kinase PAS domain-containing protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; FIST C domain; domain of unknown function DUF1745; GGDEF domain containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein.
 
 
0.986
Sdel_1682
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: similar to histidine kinase.
 
 
 0.986
Sdel_0205
PFAM: CheW domain protein; response regulator receiver; Signal transducing histidine kinase homodimeric; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: CheW domain protein; response regulator receiver; Hpt domain protein; ATP-binding region ATPase domain protein; KEGG: cff:CFF8240_0331 chemotaxis histidine kinase.
  
 
 0.985
Sdel_2093
PAS sensor protein; KEGG: bmn:BMA10247_A1432 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAS domain containing protein.
 
 0.976
Sdel_0588
PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: nis:NIS_1346 two-component sensor histidine kinase/response regulator.
 
 
 0.975
Sdel_0254
PAS sensor protein; KEGG: wsu:WS0775 nitrogen fixation positive protein; TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; CHASE4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
 
 
0.973
Sdel_1442
PAS sensor protein; KEGG: ccv:CCV52592_0849 putative two component sensor kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
  
 
 0.955
Sdel_0913
PAS sensor protein; KEGG: azo:azo2482 putative hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS fold domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; Hpt domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; response regulator receiver; extracellular solute-binding protein family 3; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein.
 
 
 0.953
Sdel_2291
TIGRFAM: flagellar hook protein FlgE; fagellar hook- basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ccv:CCV52592_2040 flagellar hook protein FlgE.
  
  
 0.949
Sdel_1921
PAS sensor protein; KEGG: nis:NIS_1620 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein.
  
 
 0.941
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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