STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0037PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lpf:lpl0792 hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family. (379 aa)    
Predicted Functional Partners:
Taci_0038
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: tmz:Tmz1t_1126 sugar transferase.
  
 0.971
Taci_0039
PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: ppd:Ppro_3385 polysaccharide biosynthesis protein CapD.
  
 0.945
Taci_0040
PFAM: transferase hexapeptide repeat containing protein; KEGG: rlt:Rleg2_6420 transferase hexapeptide repeat containing protein.
 
   0.798
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: tgr:Tgr7_2421 glutamate-1-semialdehyde-2,1- aminomutase.
       0.776
Taci_0041
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: acp:A2cp1_1503 porphobilinogen synthase; Belongs to the ALAD family.
  
    0.775
Taci_0043
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dvm:DvMF_2767 uroporphyrin-III C- methyltransferase.
       0.773
Taci_0044
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
       0.773
Taci_0045
Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain)-like protein; KEGG: siroheme synthase.
       0.773
Taci_0046
PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; KEGG: ank:AnaeK_1362 glutamyl-tRNA reductase.
       0.773
Taci_0047
Conserved hypothetical protein; KEGG: dds:Ddes_0036 nucleoside recognition domain protein.
       0.773
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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