STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0053PFAM: periplasmic binding protein; KEGG: dal:Dalk_0443 periplasmic binding protein. (298 aa)    
Predicted Functional Partners:
Taci_0526
PFAM: transport system permease protein; KEGG: dps:DP0215 Fe(III) ABC-transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.992
Taci_1520
PFAM: transport system permease protein; KEGG: noc:Noc_0838 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.990
Taci_0527
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ade:Adeh_3466 ABC cobalamin/Fe3+-siderophores transporter, ATPase subunit.
 
 
 0.960
Taci_1519
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A0491 ABC transporter component.
 
 
 0.955
Taci_0049
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Precorrin-6x reductase CbiJ/CobK; cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dde:Dde_3181 precorrin-3 methyltransferase.
  
  
 0.935
Taci_0143
KEGG: sfu:Sfum_0843 hypothetical protein.
  
 
 0.928
Taci_0051
TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Methyltransferase type 12; Methyltransferase type 11; methyltransferase small; protein-L-isoaspartate(D- aspartate) O-methyltransferase; KEGG: dde:Dde_0803 precorrin-6Y C5,15- methyltransferase (decarboxylating).
     
 0.891
Taci_0048
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ppd:Ppro_3502 precorrin-2 C20- methyltransferase; Belongs to the precorrin methyltransferase family.
    
 0.844
Taci_0050
KEGG: sea:SeAg_B2151 precorrin-4 C11- methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family.
     
 0.836
Taci_0043
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dvm:DvMF_2767 uroporphyrin-III C- methyltransferase.
     
 0.832
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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