STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0098KEGG: gme:Gmet_2721 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; GAF domain protein. (642 aa)    
Predicted Functional Partners:
Taci_0097
Putative PAS/PAC sensor protein; KEGG: abu:Abu_0994 response regulator receiver; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; metal- dependent phosphohydrolase HD region.
 
 0.949
Taci_0096
PFAM: PAS fold-4 domain protein; KEGG: lch:Lcho_0902 PAS/PAC sensor signal transduction histidine kinase.
       0.773
Taci_0111
KEGG: metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
 
   0.766
Taci_1451
KEGG: mgm:Mmc1_2383 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; PAC repeat-containing protein; PAS domain containing protein.
 
 
 0.755
Taci_0059
PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gme:Gmet_1365 metal dependent phosphohydrolase.
  
   0.734
Taci_0202
KEGG: dac:Daci_1010 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
  
   0.732
Taci_1598
PFAM: CHASE4 domain protein; metal-dependent phosphohydrolase HD sub domain; histidine kinase HAMP region domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: pca:Pcar_2753 hypothetical protein.
  
 
 0.728
Taci_1227
KEGG: dar:Daro_0187 HDIG; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
  
   0.721
Taci_1744
PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: gme:Gmet_2999 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase.
 
  
 0.647
Taci_1739
PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: gme:Gmet_2999 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase.
 
  
 0.639
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.