STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0135PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Citrate transporter; KEGG: bcs:BCAN_A1214 TRAP transporter, 4TM/12TM fusion protein. (429 aa)    
Predicted Functional Partners:
Taci_1442
TRAP-type C4-dicarboxylate transport system small permease component-like protein; KEGG: sit:TM1040_2068 hypothetical protein.
 
 
 0.886
Taci_0138
KEGG: vei:Veis_3445 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.
 
     0.843
Taci_0134
Hypothetical protein.
       0.816
Taci_1737
Hypothetical protein; KEGG: ftn:FTN_1201 capsule biosynthesis protein CapB.
 
     0.773
Taci_0137
PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: wsu:WS0783 putative periplasmic protein.
       0.769
Taci_0139
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: pap:PSPA7_5943 two-component sensor EnvZ.
 
    0.766
Taci_0136
Hypothetical protein.
       0.737
Taci_1048
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein; KEGG: dac:Daci_2885 fimbrial assembly protein.
  
     0.672
Taci_0140
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: eli:ELI_02135 two-component response regulator.
 
   
 0.637
Taci_0666
PFAM: flagellin domain protein; KEGG: psa:PST_1398 flagellar hook-associated protein FlgL.
  
     0.613
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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