STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0148KEGG: pca:Pcar_1845 NADP-reducing hydrogenase chain B. (134 aa)    
Predicted Functional Partners:
Taci_0150
TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_1605 NAD-reducing iron-only hydrogenase large subunit.
 
 
 0.989
Taci_0147
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: pca:Pcar_1846 NADP-reducing hydrogenase chain A.
 
 
 0.963
Taci_0692
PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_0467 transcriptional regulator, Fis family.
 
 
 
 0.912
Taci_0149
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ppd:Ppro_3516 NADH dehydrogenase (quinone).
 
   
 0.888
Taci_0972
KEGG: bcz:BCZK2563 sarcosine oxidase, alpha subunit.
  
 
 0.864
Taci_0470
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: gme:Gmet_2081 NADH dehydrogenase (ubiquinone), 24 kDa subunit.
  
 
 0.811
Taci_0580
Hypothetical protein; KEGG: erw:ERWE_CDS_04630 NADH dehydrogenase subunit E.
  
 
 0.811
Taci_0694
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: ank:AnaeK_1370 PHP domain protein.
 
     0.788
Taci_0690
Hypothetical protein.
 
     0.781
Taci_0691
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: bsu:BSU04690 switch protein/serine-threonine kinase.
 
     0.781
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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