STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0165Multidrug resistance efflux pump-like protein; KEGG: saz:Sama_0507 hypothetical protein. (366 aa)    
Predicted Functional Partners:
Taci_0166
Response regulator receiver protein; KEGG: hypothetical protein.
 
  
 0.942
Taci_0167
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: glycosyl transferase family 2.
 
  
 0.936
Taci_0164
KEGG: outer membrane protein-like protein.
  
 
 0.935
Taci_1384
PFAM: outer membrane efflux protein; KEGG: dal:Dalk_3730 outer membrane efflux protein.
  
 
 0.713
Taci_1525
PFAM: outer membrane efflux protein; KEGG: sat:SYN_02462 type I secretion outer membrane protein.
  
 
 0.713
Taci_0168
PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_2455 metal dependent phosphohydrolase.
       0.638
Taci_0169
Diguanylate cyclase and metal dependent phosphohydrolase; KEGG: gsu:GSU1656 sensory box/response regulator; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; metal- dependent phosphohydrolase HD sub domain; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; metal- dependent phosphohydrolase HD region; PAS domain containing protein.
       0.609
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: son:SO_2067 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; In the N-terminal section; belongs to the PRA-CH family.
  
    0.550
Taci_0163
TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: vha:VIBHAR_00948 hypothetical protein.
       0.524
Taci_1451
KEGG: mgm:Mmc1_2383 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; PAC repeat-containing protein; PAS domain containing protein.
  
  
 0.489
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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