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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0174PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: rlt:Rleg2_1643 cytochrome c biogenesis protein transmembrane region. (214 aa)    
Predicted Functional Partners:
Taci_0173
KEGG: ccv:CCV52592_1651 hypothetical protein.
 
  
 0.867
Taci_0176
TIGRFAM: redox-active disulfide protein 2; KEGG: dps:DP0946 hypothetical protein.
  
  
 0.650
Taci_0175
Hypothetical protein.
       0.554
Taci_0056
PFAM: zinc/iron permease; KEGG: dvm:DvMF_1916 zinc/iron permease.
   
    0.499
Taci_0171
KEGG: putative phytochrome sensor protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; PAS domain containing protein.
 
     0.463
Taci_0172
Hypothetical protein.
       0.422
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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