STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0250TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase. (387 aa)    
Predicted Functional Partners:
Taci_0206
TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein; KEGG: dol:Dole_0755 NifU domain-containing protein.
  
 
 0.991
Taci_0796
PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: sat:SYN_03206 ABC transporter ATP-binding protein.
 
  
 0.976
Taci_0797
PFAM: SufBD protein; KEGG: sat:SYN_02867 ABC transporter system permease involved in Fe-S cluster assembly.
  
 
 0.936
Taci_0251
KEGG: sfu:Sfum_3402 SirA family protein; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.917
Taci_0249
KEGG: dol:Dole_3245 hypothetical protein.
 
     0.855
Taci_0248
KEGG: pca:Pcar_0821 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.836
Taci_0254
PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: dal:Dalk_3066 2-hydroxyglutaryl-CoA dehydratase D-component.
 
     0.745
Taci_0253
CoA-substrate-specific enzyme activase; KEGG: dps:DP2514 2-hydroxyglutaryl-CoA dehydratase, alpha subunit; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
       0.743
Taci_0252
KEGG: sat:SYN_01183 NifU -like protein involved in Fe-S cluster formation.
     
 0.740
Taci_1436
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sus:Acid_6996 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
  
 0.619
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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