STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0251KEGG: sfu:Sfum_3402 SirA family protein; Belongs to the sulfur carrier protein TusA family. (202 aa)    
Predicted Functional Partners:
Taci_0254
PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: dal:Dalk_3066 2-hydroxyglutaryl-CoA dehydratase D-component.
 
    0.927
Taci_0250
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase.
 
 
 
 0.917
Taci_0249
KEGG: dol:Dole_3245 hypothetical protein.
 
  
 0.915
iscS
Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
   
 
 0.907
Taci_0253
CoA-substrate-specific enzyme activase; KEGG: dps:DP2514 2-hydroxyglutaryl-CoA dehydratase, alpha subunit; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
 
     0.836
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.744
Taci_0252
KEGG: sat:SYN_01183 NifU -like protein involved in Fe-S cluster formation.
       0.727
Taci_0769
TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; elongation factor Tu domain 2 protein; KEGG: dde:Dde_3173 selenocysteine-specific translation elongation factor SelB.
 
   
 0.721
Taci_0248
KEGG: pca:Pcar_0821 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
    
0.659
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.648
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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