STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0277PFAM: polysaccharide deacetylase; KEGG: gme:Gmet_0882 polysaccharide deacetylase. (298 aa)    
Predicted Functional Partners:
Taci_0280
PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_0885 glycosyl transferase family protein.
 
 
 0.992
Taci_0278
PFAM: NAD-dependent epimerase/dehydratase; KEGG: gbm:Gbem_2983 NAD-dependent epimerase/dehydratase.
 
  
 0.956
Taci_0282
PFAM: glycosyl transferase family 39; KEGG: gme:Gmet_0887 glycosyl transferase family protein.
  
 0.946
Taci_0279
PFAM: formyl transferase domain protein; KEGG: gme:Gmet_0884 hypothetical protein.
 
  
 0.937
Taci_0167
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: glycosyl transferase family 2.
  
  
 0.781
Taci_0370
PFAM: glycosyl transferase family 2; KEGG: bcy:Bcer98_1099 glycosyl transferase family protein.
  
  
 0.781
Taci_0276
Nucleotide sugar dehydrogenase; KEGG: hha:Hhal_2178 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase.
  
  
 0.722
Taci_0281
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: glo:Glov_3272 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.694
Taci_0435
PFAM: protein of unknown function DUF502; KEGG: wsu:WS0356 hypothetical protein.
 
     0.498
Taci_0833
TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; PEP-utilising protein mobile region; HpcH/HpaI aldolase; Pyruvate kinase alpha/beta; KEGG: bha:BH3163 pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.418
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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