Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Taci_0278PFAM: NAD-dependent epimerase/dehydratase; KEGG: gbm:Gbem_2983 NAD-dependent epimerase/dehydratase. (332 aa)    
Predicted Functional Partners:
Taci_0279
PFAM: formyl transferase domain protein; KEGG: gme:Gmet_0884 hypothetical protein.
   
 0.990
Taci_0280
PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_0885 glycosyl transferase family protein.
  
 0.974
Taci_0277
PFAM: polysaccharide deacetylase; KEGG: gme:Gmet_0882 polysaccharide deacetylase.
 
  
 0.957
Taci_0282
PFAM: glycosyl transferase family 39; KEGG: gme:Gmet_0887 glycosyl transferase family protein.
 
  
 0.907
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 0.892
rpsH
Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
   
  0.870
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.858
rplD
Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.
   
  0.852
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
   
 0.851
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
  0.840
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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