STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0284PFAM: Cache domain protein; KEGG: rpi:Rpic_0536 methyl-accepting chemotaxis sensory transducer with cache sensor. (303 aa)    
Predicted Functional Partners:
Taci_1572
PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver; KEGG: bcy:Bcer98_1369 putative CheW protein.
 
 
 0.870
Taci_0357
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: gme:Gmet_2710 CheA signal transduction histidine kinase.
  
 
 0.864
Taci_0285
PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: bha:BH3915 methyl-accepting chemotaxis protein.
      0.830
Taci_0283
PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gsu:GSU1033 methyl-accepting chemotaxis protein.
      0.758
Taci_0282
PFAM: glycosyl transferase family 39; KEGG: gme:Gmet_0887 glycosyl transferase family protein.
  
    0.518
Taci_1451
KEGG: mgm:Mmc1_2383 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; PAC repeat-containing protein; PAS domain containing protein.
  
 
 0.518
Taci_0359
PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: hch:HCH_03849 chemotaxis signal transduction protein.
  
   0.477
Taci_0219
PFAM: protein of unknown function DUF342; KEGG: azo:azo1270 hypothetical protein.
  
    0.469
Taci_1305
PFAM: protein of unknown function DUF342; KEGG: bha:BH2430 hypothetical protein.
  
    0.467
Taci_0066
PFAM: GHMP kinase; KEGG: yen:YE4039 PduX.
  
     0.466
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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