STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0286PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: cha:CHAB381_0232 flavodoxin. (398 aa)    
Predicted Functional Partners:
Taci_1579
PFAM: flavin reductase domain protein FMN-binding; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.
    
 0.904
Taci_0351
PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: gme:Gmet_1148 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
    
 0.899
Taci_0153
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dps:DP1550 NADH oxidase.
 
  
 0.892
Taci_0007
Superoxide reductase; PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: gsu:GSU0720 desulfoferrodoxin ferrous iron- binding domain-containing protein.
 
  
 0.693
Taci_0103
PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; FAD dependent oxidoreductase; SMART: Rhodanese domain protein; KEGG: gme:Gmet_3484 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
    
 0.630
Taci_0287
KEGG: bha:BH3624 flagellar protein.
       0.543
Taci_0102
PFAM: Rubrerythrin; KEGG: dde:Dde_1320 rubrerythrin, putative.
 
  
 0.502
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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