STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0290TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dol:Dole_0080 glyoxalase/bleomycin resistance protein/dioxygenase. (133 aa)    
Predicted Functional Partners:
Taci_0289
PFAM: cobalamin B12-binding domain protein; KEGG: gsu:GSU1578 B12-binding protein.
  
 0.998
Taci_0288
KEGG: methylmalonyl-CoA mutase, large subunit; K01848 methylmalonyl-CoA mutase, N-terminal domain; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.
 
  
 0.991
Taci_0943
KEGG: aba:Acid345_2365 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase.
  
 0.955
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
  
 0.812
Taci_0291
PFAM: carboxyl transferase; KEGG: dal:Dalk_3780 propionyl-CoA carboxylase.
 
  
 0.803
Taci_0588
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: 4Fe-4S ferredoxin iron-sulfur binding domain protein; K00176 2-oxoglutarate ferredoxin oxidoreductase subunit delta.
  
  
 0.766
Taci_0292
PFAM: sodium pump decarboxylase gamma subunit; KEGG: aba:Acid345_3024 hypothetical protein.
       0.627
Taci_0293
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sfu:Sfum_0461 conserved carboxylase region.
  
  
 0.604
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.569
Taci_0212
PFAM: nitroreductase; KEGG: pca:Pcar_0509 nitroreductase.
  
  
 0.534
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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