STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0308KEGG: pat:Patl_0248 CheC-like protein. (162 aa)    
Predicted Functional Partners:
Taci_0357
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: gme:Gmet_2710 CheA signal transduction histidine kinase.
   
 
 0.942
Taci_0531
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bha:BH2444 two-component response regulator involved in modulation of flagellar.
  
 
 0.929
Taci_0265
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvm:DvMF_0226 response regulator receiver protein.
   
 
  0.904
Taci_1321
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bha:BH2444 two-component response regulator involved in modulation of flagellar.
  
 
  0.904
Taci_1572
PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver; KEGG: bcy:Bcer98_1369 putative CheW protein.
   
 
 0.901
Taci_1451
KEGG: mgm:Mmc1_2383 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; PAC repeat-containing protein; PAS domain containing protein.
   
 
 0.865
Taci_0548
PFAM: response regulator receiver; Hpt domain protein; SMART: response regulator receiver; KEGG: asa:ASA_3480 hybrid sensory histidine kinase BarA.
   
 
 0.861
Taci_0306
PFAM: lipid A biosynthesis acyltransferase; KEGG: rce:RC1_3612 lipid A biosynthesis lauroyl acyltransferase, putative.
       0.512
Taci_0307
Hypothetical protein; KEGG: sil:SPO2801 lipopolysaccharide core biosynthesis mannosyltransferase.
       0.512
Taci_0309
PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: pfl:PFL_0128 methyl-accepting chemotaxis transducer.
     
 0.509
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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