STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0396Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dvm:DvMF_1364 ferric uptake regulator, Fur family; Belongs to the Fur family. (175 aa)    
Predicted Functional Partners:
Taci_0397
KEGG: pca:Pcar_1967 hypothetical protein.
       0.773
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.725
Taci_0107
PFAM: FeoA family protein; iron dependent repressor; SMART: iron dependent repressor; KEGG: dal:Dalk_2732 iron (metal) dependent repressor, DtxR family.
  
  
 0.661
Taci_1480
KEGG: rru:Rru_A2872 L-2-amino-thiazoline-4- carboxylic acid hydrolase.
  
    0.574
Taci_0400
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; KEGG: cco:CCC13826_1743 nitrogenase cofactor biosynthesis protein NifB.
     
 0.547
Taci_0395
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: pca:Pcar_0749 hypothetical protein.
       0.541
Taci_0399
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0180 alkyl sulfate ester ABC transporter AstC, ATP-binding protein.
     
 0.523
Taci_0398
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cco:CCC13826_1746 putative molybdenum ABC transporter, solute-binding protein.
       0.512
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.510
Taci_0607
KEGG: pmr:PMI0791 CoA-binding protein.
  
    0.473
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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