STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0411PFAM: FdrA family protein; KEGG: ecp:ECP_4036 YahF/FdrA-like protein. (517 aa)    
Predicted Functional Partners:
Taci_0413
PFAM: protein of unknown function DUF1116; KEGG: ecp:ECP_4035 hypothetical protein.
     0.990
Taci_0414
PFAM: cyclase family protein; KEGG: pat:Patl_2320 putative cyclase.
 
     0.882
Taci_0408
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: atc:AGR_pAT_799 hypothetical protein.
 
    0.881
Taci_0407
Transcriptional regulator, CdaR; PFAM: purine catabolism PurC domain protein; KEGG: bsu:BSU32420 transcriptional regulator.
 
     0.843
Taci_0410
KEGG: cko:CKO_04287 hypothetical protein.
  
   0.819
Taci_0409
Formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet0367 acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family.
   
   0.793
Taci_1436
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sus:Acid_6996 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
  
 0.760
Taci_0412
Hypothetical protein.
       0.751
Taci_0021
KEGG: sfu:Sfum_3896 isocitrate dehydrogenase, NADP- dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase.
  
  
 0.708
Taci_0447
Citrate synthase-like protein; KEGG: sus:Acid_3102 citrate synthase.
  
 
 0.635
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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