STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0452KEGG: gdj:Gdia_0267 hypothetical protein. (184 aa)    
Predicted Functional Partners:
Taci_0260
PFAM: protein of unknown function DUF988; KEGG: bce:BC1599 hypothetical protein.
  
     0.662
Taci_1300
PFAM: protein of unknown function DUF501.
  
     0.539
Taci_0275
TIGRFAM: proton-coupled thiamine transporter YuaJ; KEGG: bsu:BSU30990 hypothetical protein.
  
     0.513
Taci_0453
KEGG: bcb:BCB4264_A4276 phosphate butyryltransferase; TIGRFAM: phosphate butyryltransferase; PFAM: phosphate acetyl/butaryl transferase.
       0.458
Taci_0836
PFAM: alanine racemase domain protein; KEGG: mlo:mlr5700 hypothetical protein.
  
     0.450
Taci_1585
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sme:SM_b20754 hypothetical protein.
  
     0.403
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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