STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0504KEGG: oca:OCAR_5226 hypothetical protein. (451 aa)    
Predicted Functional Partners:
Taci_0502
PFAM: protein of unknown function DUF1063; KEGG: dvm:DvMF_1488 protein of unknown function DUF1063; Belongs to the UPF0597 family.
       0.774
recD2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.774
Taci_0807
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
     0.764
Taci_0262
PFAM: Peptidoglycan-binding LysM; Tetratricopeptide TPR_2 repeat protein; SMART: Peptidoglycan-binding LysM; KEGG: rpi:Rpic_2267 peptidoglycan-binding LysM.
  
     0.759
Taci_0316
Putative diguanylate cyclase; KEGG: hch:HCH_03148 response regulator.
  
     0.751
Taci_1048
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein; KEGG: dac:Daci_2885 fimbrial assembly protein.
  
     0.741
Taci_0666
PFAM: flagellin domain protein; KEGG: psa:PST_1398 flagellar hook-associated protein FlgL.
  
     0.718
Taci_0374
PFAM: Curli production assembly/transport component CsgG; KEGG: sus:Acid_5438 curli production assembly/transport component CsgG.
  
     0.703
Taci_0501
PFAM: Amidohydrolase 3; KEGG: bsu:BSU29550 hypothetical protein.
       0.701
Taci_1377
KEGG: sfu:Sfum_2486 hypothetical protein.
  
     0.648
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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