STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0551Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rme:Rmet_5040 transcriptional regulator, GntR family. (219 aa)    
Predicted Functional Partners:
Taci_0550
PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_3934 protein of unknown function DUF6 transmembrane.
       0.776
Taci_0549
PFAM: protein of unknown function DUF218; KEGG: afr:AFE_2571 hypothetical protein.
       0.750
Taci_0552
TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: kpn:KPN_03215 propanediol utilization: B12 related; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.608
Taci_0553
Hypothetical protein.
       0.523
Taci_0554
PFAM: aminotransferase class I and II; KEGG: bha:BH1589 aminotransferase.
       0.523
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.523
Taci_1430
PFAM: GntR domain protein; Ribonuclease R winged- helix domain protein; KEGG: dac:Daci_2815 GntR domain-containing protein.
  
  
 0.479
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.