STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0561PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcr:BCAH187_A3838 sugar ABC transporter, ATP- binding protein. (506 aa)    
Predicted Functional Partners:
Taci_0562
PFAM: inner-membrane translocator; KEGG: smd:Smed_3656 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
Taci_0563
PFAM: inner-membrane translocator; KEGG: smd:Smed_3657 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
Taci_0560
PFAM: basic membrane lipoprotein; KEGG: dds:Ddes_1947 basic membrane lipoprotein.
 
 0.996
Taci_0564
Ribosylpyrimidine nucleosidase; PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: sfv:SFV_2237 ribonucleoside hydrolase 2.
       0.807
Taci_1395
PFAM: inner-membrane translocator; KEGG: rpb:RPB_2083 inner-membrane translocator ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
      0.590
Taci_0559
PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: aav:Aave_4199 transcriptional regulator, LacI family.
 
     0.463
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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