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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0584Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: bvi:Bcep1808_4717 RpiR family transcriptional regulator. (288 aa)    
Predicted Functional Partners:
Taci_1459
TIGRFAM: PTS system, glucose-specific IIBC subunit; PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; sugar- specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; KEGG: bha:BH0844 PTS system, glucose-specific enzyme II, A component.
 
  
 0.852
Taci_1245
PFAM: OstA family protein; KEGG: gbm:Gbem_3347 organic solvent tolerance protein.
  
     0.578
Taci_0657
PFAM: O-antigen polymerase; KEGG: bvi:Bcep1808_2756 O-antigen polymerase.
  
     0.577
Taci_1737
Hypothetical protein; KEGG: ftn:FTN_1201 capsule biosynthesis protein CapB.
  
    0.554
Taci_1693
PFAM: UvrD/REP helicase; KEGG: ade:Adeh_2512 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
   
 0.465
Taci_1681
KEGG: bsu:BSU35790 mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I.
  
  
 0.461
Taci_0515
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: mmr:Mmar10_0276 LacI family transcription regulator.
  
   
 0.458
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
    0.451
Taci_0546
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vha:VIBHAR_05409 phosphoglycolate phosphatase.
 
    0.449
Taci_0682
PFAM: outer membrane chaperone Skp (OmpH); KEGG: rce:RC1_1199 outer membrane protein OmpH precursor.
  
     0.444
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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