STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0592Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: bpt:Bpet4860 putative aminotransferase. (411 aa)    
Predicted Functional Partners:
Taci_1670
PFAM: aminotransferase class I and II; KEGG: bac:BamMC406_3440 GntR family transcriptional regulator.
  
  
 
0.927
Taci_0315
Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: mxa:MXAN_0212 aminotransferase, class I and II family protein.
  
  
 
0.913
Taci_0444
TIGRFAM: lysine biosynthesis enzyme LysX; alpha-L- glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; KEGG: mpt:Mpe_A2610 SSU ribosomal protein S6P modification protein; Belongs to the RimK family.
     
  0.900
buk-3
TIGRFAM: butyrate kinase; PFAM: acetate and butyrate kinase; KEGG: bce:BC4161 butyrate kinase; Belongs to the acetokinase family.
       0.776
buk-2
TIGRFAM: butyrate kinase; PFAM: acetate and butyrate kinase; KEGG: bat:BAS4069 butyrate kinase; Belongs to the acetokinase family.
       0.697
Taci_0589
KEGG: dal:Dalk_2229 putative ATP/GTP-binding protein.
       0.688
Taci_0588
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: 4Fe-4S ferredoxin iron-sulfur binding domain protein; K00176 2-oxoglutarate ferredoxin oxidoreductase subunit delta.
       0.627
Taci_0585
TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dvm:DvMF_2057 pyruvate ferredoxin/flavodoxin oxidoreductase.
       0.533
Taci_0587
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dal:Dalk_2231 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
       0.532
Taci_0586
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: sfu:Sfum_0300 thiamine pyrophosphate enzyme domain protein TPP-binding.
       0.531
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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