STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0613PFAM: carbon starvation protein CstA; KEGG: scl:sce6207 carbon starvation protein A. (539 aa)    
Predicted Functional Partners:
Taci_0612
Hypothetical protein.
       0.666
Taci_0614
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: ppd:Ppro_0549 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
    0.515
Taci_0615
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: ppd:Ppro_0548 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit.
  
    0.511
Taci_0611
PFAM: Heavy metal transport/detoxification protein; KEGG: mfa:Mfla_1081 heavy metal transport/detoxification protein.
       0.471
Taci_0121
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aha:AHA_2310 D-ribose transporter ATP binding protein.
   
  
 0.456
Taci_0610
TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: tgr:Tgr7_2514 heavy metal translocating P- type ATPase.
       0.445
Taci_0122
PFAM: inner-membrane translocator; KEGG: sugar ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
   
    0.430
Taci_0123
PFAM: inner-membrane translocator; KEGG: scl:sce4028 ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
   
    0.430
Taci_0608
PFAM: thioesterase superfamily protein; KEGG: sus:Acid_5912 thioesterase superfamily protein.
  
    0.401
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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