STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0643PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dal:Dalk_0632 N-acetylneuraminate synthase. (342 aa)    
Predicted Functional Partners:
Taci_0677
PFAM: acylneuraminate cytidylyltransferase; KEGG: dal:Dalk_0629 aminotransferase class-III.
  
 0.981
Taci_0645
Spore coat polysaccharide biosynthesis protein predicted glycosyltransferase-like protein; KEGG: dal:Dalk_0630 glycosyltransferase 28 domain protein.
 
  
 0.959
Taci_0644
PFAM: GCN5-related N-acetyltransferase; KEGG: cak:Caul_2892 GCN5-related N- acetyltransferase.
 
  
 0.915
Taci_1289
TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: bvi:Bcep1808_2892 3-deoxy-D-manno- octulosonate 8-phosphate phosphatase.
   
 0.859
Taci_0701
KEGG: gur:Gura_4087 carbonic anhydrase.
     0.783
Taci_0669
PFAM: protein of unknown function DUF115; KEGG: cjd:JJD26997_0373 motility accessory factor.
 
  
 0.717
Taci_0679
PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: mmw:Mmwyl1_3560 polysaccharide biosynthesis protein CapD.
 
  
 0.629
Taci_0673
KEGG: dal:Dalk_0633 LPS biosynthesis protein.
 
   0.614
Taci_0680
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: pca:Pcar_1141 pyridoxal-phosphate-dependent aminotransferase enzyme; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.571
Taci_0665
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: bha:BH3621 flagellar hook-associated protein FlgK.
  
  
 0.561
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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