STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0681KEGG: gme:Gmet_2873 hypothetical protein. (71 aa)    
Predicted Functional Partners:
Taci_0682
PFAM: outer membrane chaperone Skp (OmpH); KEGG: rce:RC1_1199 outer membrane protein OmpH precursor.
 
     0.719
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.605
Taci_1245
PFAM: OstA family protein; KEGG: gbm:Gbem_3347 organic solvent tolerance protein.
  
     0.587
Taci_1277
PFAM: protein of unknown function DUF1022; KEGG: mch:Mchl_1220 protein of unknown function DUF1022.
  
     0.570
Taci_1134
PFAM: fatty acid synthesis plsX protein; KEGG: dds:Ddes_0116 glycine reductase.
  
     0.542
Taci_1140
KEGG: ppr:PBPRB1542 GrdX protein; Contains selenocysteine.
  
     0.484
Taci_0250
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase.
 
   
 0.475
Taci_1137
PFAM: glycine reductase complex selenoprotein A; KEGG: dds:Ddes_0118 glycine reductase; Contains selenocysteine.
  
     0.450
Taci_1136
Contains selenocysteine; TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; glycine reductase, selenoprotein B; PFAM: Selenoprotein B glycine/betaine/sarcosine/D- proline reductase; KEGG: dds:Ddes_0113 selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family.
  
     0.409
Taci_0657
PFAM: O-antigen polymerase; KEGG: bvi:Bcep1808_2756 O-antigen polymerase.
  
     0.407
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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