STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0696PFAM: protein of unknown function DUF107; KEGG: sus:Acid_1498 nodulation efficiency protein NfeD. (105 aa)    
Predicted Functional Partners:
Taci_0697
PFAM: band 7 protein; SMART: band 7 protein; KEGG: sat:SYN_02180 membrane protease subunit, stomatin/prohibitin -like protein.
 
  
 0.944
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.711
Taci_0692
PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_0467 transcriptional regulator, Fis family.
       0.651
Taci_0693
HPr kinase.
       0.651
Taci_0694
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: ank:AnaeK_1370 PHP domain protein.
       0.651
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: ppd:Ppro_1731 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.552
Taci_0699
PFAM: DNA polymerase III delta; KEGG: pmy:Pmen_3788 DNA polymerase III subunit delta.
       0.533
Taci_0690
Hypothetical protein.
       0.532
Taci_0691
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: bsu:BSU04690 switch protein/serine-threonine kinase.
       0.532
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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