STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0701KEGG: gur:Gura_4087 carbonic anhydrase. (221 aa)    
Predicted Functional Partners:
Taci_0038
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: tmz:Tmz1t_1126 sugar transferase.
     0.939
Taci_0643
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dal:Dalk_0632 N-acetylneuraminate synthase.
     0.783
Taci_0037
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lpf:lpl0792 hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
     0.704
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.517
rpmH
TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: abu:Abu_1625 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
       0.508
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
       0.508
Taci_0704
Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
       0.508
Taci_0705
PFAM: 60 kDa inner membrane insertion protein; KEGG: dvu:DVU1077 inner membrane protein, 60 kDa.
       0.411
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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