STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0717Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: amc:MADE_03339 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA- binding domain. (226 aa)    
Predicted Functional Partners:
Taci_1372
KEGG: bvi:Bcep1808_5667 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; CHASE4 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAC repeat-containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein.
 
 
 0.983
Taci_1738
KEGG: vvy:VV1157 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
 0.980
Taci_1451
KEGG: mgm:Mmc1_2383 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; PAC repeat-containing protein; PAS domain containing protein.
 
0.978
Taci_0716
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_2006 integral membrane sensor signal transduction histidine kinase.
 
 0.970
Taci_1376
PAS/PAC sensor signal transduction histidine kinase; KEGG: dar:Daro_0420 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein.
 
 0.960
Taci_0357
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: gme:Gmet_2710 CheA signal transduction histidine kinase.
 
 
0.905
Taci_0089
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: mgm:Mmc1_1492 multi-sensor signal transduction histidine kinase.
 
 0.891
Taci_0157
KEGG: azo:azo3945 putative hybrid sensor and regulator protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: GGDEF domain containing protein; histidine kinase A domain protein; response regulator receiver; ATP- binding region ATPase domain protein.
 
0.794
Taci_0548
PFAM: response regulator receiver; Hpt domain protein; SMART: response regulator receiver; KEGG: asa:ASA_3480 hybrid sensory histidine kinase BarA.
 
 
0.748
Taci_0472
PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_00151 2Fe-2S iron-sulfur cluster binding domain-containing protein.
    
 
 0.740
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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