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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmBTIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dps:DP1683 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (64 aa)    
Predicted Functional Partners:
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.994
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: fta:FTA_1539 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.993
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: mgm:Mmc1_1643 LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.992
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: gbm:Gbem_0919 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.992
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.991
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.991
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.991
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: bcb:BCB4264_A3943 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.991
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.990
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.990
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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